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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
8
WGBS
6
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
8
DNA accessibility
8
DNA methylation
3
3D chromatin structure
Target of assay
3
control
Date released
334
November, 2017
302
May, 2021
260
May, 2020
207
August, 2017
204
October, 2019
195
June, 2019
162
July, 2018
101
February, 2021
97
May, 2019
79
November, 2018
72
December, 2017
72
September, 2018
68
July, 2019
65
April, 2019
47
April, 2018
45
August, 2021
42
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
13
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
68
bigWig
66
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
53
tissue
15
primary cell
Organ
21
heart
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
8
liver
7
epithelium
7
kidney
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
68
AMP
Genome assembly (visualization)
63
GRCh38
59
hg19
Lab
68
AMP-T2D consortium
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
body of pancreas
2
2
heart
2
1
1
right lobe of liver
2
2
frontal cortex
1
1
1
+ See 19 more…
primary cell
cerebellar granule cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 8 more…
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