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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
49
single cell RNA-seq
18
small RNA-seq
17
ATAC-seq
15
RRBS
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
118
Transcription
27
DNA methylation
19
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
bigWig
131
bam
114
tsv
44
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
172
Homo sapiens
Biosample type
98
tissue
74
primary cell
Organ
46
epithelium
45
pancreas
25
heart
25
kidney
21
connective tissue
18
brain
13
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
172
AMP
Genome assembly (visualization)
141
hg19
140
GRCh38
Lab
158
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
172 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
Hi-C
FAIRE-seq
tissue
kidney
3
11
1
1
heart left ventricle
2
2
1
4
islet of Langerhans
6
1
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 30 more…
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