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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
13
single cell RNA-seq
12
WGBS
10
snATAC-seq
2
FAIRE-seq
Assay category
101
Transcription
32
DNA accessibility
32
DNA binding
27
DNA methylation
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
154
bam
153
bigWig
91
tsv
73
fastq
53
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
16
bigBed narrowPeak
1
csv
Organism
191
Homo sapiens
Biosample type
100
primary cell
92
tissue
Organ
78
pancreas
72
epithelium
25
heart
19
lung
17
connective tissue
15
brain
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
9
liver
6
musculature of body
3
artery
2
pericardium
1
eye
1
limb
Project
173
AMP
19
LungMap
Genome assembly (visualization)
159
hg19
151
GRCh38
Lab
173
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
192 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
single cell RNA-seq
WGBS
snATAC-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 22 more…
tissue
lung
9
10
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
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