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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
12
single cell RNA-seq
10
snATAC-seq
6
ATAC-seq
4
Hi-C
2
FAIRE-seq
Assay category
74
Transcription
27
DNA methylation
18
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
122
Homo sapiens
Biosample type
96
tissue
27
primary cell
Organ
25
heart
19
lung
17
connective tissue
15
brain
12
adipose tissue
11
epithelium
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
104
AMP
19
LungMap
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
104
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
123 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
WGBS
single cell RNA-seq
snATAC-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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