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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
12
WGBS
12
single cell RNA-seq
11
RRBS
8
Hi-C
Assay category
68
Transcription
23
DNA methylation
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
658
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
254
October, 2019
241
May, 2020
177
August, 2021
168
July, 2018
115
May, 2019
101
May, 2022
100
February, 2023
94
December, 2017
90
July, 2019
78
November, 2018
76
October, 2018
59
September, 2018
58
March, 2020
57
April, 2019
56
September, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
28
June, 2019
25
February, 2020
15
October, 2017
14
November, 2020
9
April, 2020
7
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
March, 2019
1
May, 2023
Available data
71
bigWig
68
bam
59
tsv
19
bed bedMethyl
19
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
99
Homo sapiens
Biosample type
75
tissue
24
primary cell
Organ
21
heart
18
connective tissue
16
brain
13
epithelium
12
adipose tissue
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
9
lung
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
90
AMP
9
LungMap
Genome assembly (visualization)
74
hg19
67
GRCh38
Lab
90
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
99 results
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total RNA-seq
small RNA-seq
WGBS
single cell RNA-seq
RRBS
Hi-C
tissue
lung
9
heart left ventricle
2
4
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
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