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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
13
ATAC-seq
12
WGBS
8
Hi-C
single cell RNA-seq
2
FAIRE-seq
Assay category
62
Transcription
27
DNA methylation
15
DNA accessibility
8
3D chromatin structure
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
89
bigWig
79
bam
62
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
7
fastq
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
112
Homo sapiens
Biosample type
77
tissue
35
primary cell
Organ
25
heart
20
epithelium
18
connective tissue
15
brain
13
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
105
AMP
7
HPAP
Genome assembly (visualization)
88
hg19
83
GRCh38
Lab
105
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
FAIRE-seq
tissue
heart left ventricle
2
1
2
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic alpha cell
5
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic beta cell
2
+ See 20 more…
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