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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
13
ATAC-seq
12
WGBS
7
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
MPRA
Assay category
65
Transcription
27
DNA methylation
15
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
92
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
7
fastq
bed bed3+
4
hdf5
3
bedpe bed3+
3
cool
3
hic
2
bigBed narrowPeak
1
txt
Organism
114
Homo sapiens
Biosample type
77
tissue
37
primary cell
1
cell line
Organ
25
heart
21
epithelium
17
connective tissue
16
pancreas
15
brain
12
adipose tissue
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
5
limb
3
artery
2
pericardium
1
eye
Project
105
AMP
10
HPAP
Genome assembly (visualization)
90
hg19
86
GRCh38
Lab
105
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
115 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
MPRA
tissue
heart left ventricle
2
1
2
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic alpha cell
5
1
pancreatic beta cell
2
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 19 more…
cell line
MIN6
1
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