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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
17
small RNA-seq
12
RRBS
9
ATAC-seq
8
Hi-C
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
53
Transcription
16
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
81
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
70
bigWig
60
bam
53
tsv
14
bed bedMethyl
14
bigBed bedMethyl
7
fastq
4
bed bed3+
4
hdf5
3
bed narrowPeak
2
bigBed narrowPeak
Organism
88
Homo sapiens
Biosample type
56
tissue
32
primary cell
Organ
heart
20
epithelium
18
brain
18
connective tissue
13
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
pericardium
1
eye
Project
81
AMP
7
HPAP
Genome assembly (visualization)
72
hg19
64
GRCh38
Lab
81
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
organ_slims!
pericardium
heart
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 19 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 16 more…
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