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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
total RNA-seq
46
single cell RNA-seq
34
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
114
Transcription
34
DNA binding
27
DNA methylation
9
3D chromatin structure
8
DNA accessibility
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
165
bam
164
bigWig
114
tsv
79
fastq
37
bed narrowPeak
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
192
Homo sapiens
Biosample type
90
tissue
74
primary cell
28
cell line
Organ
46
epithelium
45
pancreas
27
blood
27
bodily fluid
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
11
liver
10
musculature of body
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
192
AMP
Genome assembly (visualization)
170
hg19
158
GRCh38
Lab
192
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
192 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
6
1
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 30 more…
cell line
GM12878
27
HepG2
1
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