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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
Transcription
27
DNA methylation
25
DNA binding
8
3D chromatin structure
8
DNA accessibility
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
42
bam
41
bigWig
28
bed narrowPeak
25
fastq
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
68
Homo sapiens
Biosample type
37
tissue
18
cell line
13
primary cell
Organ
18
blood
18
bodily fluid
14
heart
8
epithelium
7
brain
7
spleen
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
3
liver
2
connective tissue
2
pancreas
1
artery
1
eye
1
pericardium
Project
68
AMP
Genome assembly (visualization)
47
hg19
35
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
spleen
7
gastrocnemius medialis
4
aorta
2
heart right ventricle
2
+ See 14 more…
cell line
GM12878
18
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
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