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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
18
single cell RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
2
FAIRE-seq
Assay category
195
Transcription
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
209
bigWig
208
bam
191
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
7
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
230
Homo sapiens
Biosample type
197
tissue
33
primary cell
Organ
163
pancreas
epithelium
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
230
AMP
Genome assembly (visualization)
209
hg19
205
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
230 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
pancreatic cell
3
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
mast cell
2
mesenchymal stem cell of adipose
1
1
+ See 18 more…
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