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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
51
single cell RNA-seq
17
small RNA-seq
13
RRBS
8
Hi-C
4
WGBS
2
ATAC-seq
2
FAIRE-seq
Assay category
222
Transcription
17
DNA methylation
8
3D chromatin structure
4
DNA accessibility
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
228
bigWig
225
bam
218
tsv
50
fastq
15
bed bedMethyl
15
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
bed narrowPeak
2
bigBed narrowPeak
Organism
251
Homo sapiens
Biosample type
177
tissue
74
primary cell
Organ
163
pancreas
46
epithelium
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
251
AMP
Genome assembly (visualization)
238
hg19
222
GRCh38
Lab
251
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
Hi-C
WGBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 20 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 30 more…
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