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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
16
small RNA-seq
14
single cell RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
72
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
92
bigWig
89
bam
72
tsv
21
bed bedMethyl
21
bigBed bedMethyl
11
fastq
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
71
tissue
42
primary cell
Organ
pancreas
46
epithelium
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
113
AMP
Genome assembly (visualization)
96
hg19
86
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
gastrocnemius medialis
4
+ See 23 more…
primary cell
pancreatic cell
3
cerebellar granule cell
2
endothelial cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 26 more…
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