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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
51
single cell RNA-seq
18
small RNA-seq
14
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
2
FAIRE-seq
Assay category
228
Transcription
24
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
239
bigWig
237
bam
224
tsv
50
fastq
21
bed bedMethyl
21
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
264
Homo sapiens
Biosample type
190
tissue
74
primary cell
Organ
163
pancreas
46
epithelium
25
heart
20
connective tissue
18
brain
12
adipose tissue
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
264
AMP
Genome assembly (visualization)
245
hg19
235
GRCh38
Lab
264
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 22 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 30 more…
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