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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
42
total RNA-seq
16
small RNA-seq
14
single cell RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
118
DNA binding
72
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
25
control
5
RNA binding protein
5
transcription factor
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
207
bam
188
bigWig
103
bed narrowPeak
98
bigBed narrowPeak
72
tsv
21
bed bedMethyl
21
bigBed bedMethyl
11
fastq
4
bed bed3+
4
hdf5
Organism
231
Homo sapiens
Biosample type
184
tissue
47
primary cell
Organ
pancreas
62
vasculature
61
blood vessel
51
epithelium
46
brain
46
heart
20
connective tissue
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
2
pericardium
1
eye
Project
231
AMP
Genome assembly (visualization)
192
hg19
181
GRCh38
Lab
231
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 25 more…
primary cell
kidney epithelial cell
5
1
1
pancreatic cell
3
cerebellar granule cell
2
endothelial cell
2
epithelial cell of proximal tubule
1
1
+ See 26 more…
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