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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
14
ATAC-seq
12
WGBS
9
ChIP-seq
8
Hi-C
6
single cell RNA-seq
Assay category
68
Transcription
27
DNA methylation
14
DNA accessibility
9
DNA binding
8
3D chromatin structure
Target of assay
6
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
102
bigWig
100
bam
68
tsv
23
bed bedMethyl
23
bigBed bedMethyl
20
fastq
19
bed narrowPeak
14
tagAlign
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
126
Homo sapiens
Biosample type
92
tissue
34
primary cell
Organ
27
brain
25
heart
19
connective tissue
14
epithelium
13
adipose tissue
12
pancreas
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
126
AMP
Genome assembly (visualization)
99
hg19
90
GRCh38
Lab
125
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
126 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
ChIP-seq
Hi-C
single cell RNA-seq
tissue
brain
1
9
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 23 more…
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