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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
25
ChIP-seq
18
small RNA-seq
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
6
single cell RNA-seq
2
FAIRE-seq
Assay category
73
Transcription
25
DNA binding
12
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
bam
114
bigWig
73
tsv
33
fastq
28
bed narrowPeak
23
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
126
Homo sapiens
Biosample type
78
tissue
25
primary cell
23
cell line
Organ
23
heart
18
blood
18
bodily fluid
17
connective tissue
16
brain
14
liver
12
adipose tissue
11
blood vessel
11
vasculature
9
musculature of body
8
epithelium
7
kidney
7
spleen
5
limb
5
pancreas
3
artery
1
pericardium
Project
126
AMP
Genome assembly (visualization)
108
GRCh38
105
hg19
Lab
126
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
BIOSAMPLE
ASSAY
126 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 17 more…
cell line
GM12878
18
HepG2
5
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