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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
25
ChIP-seq
18
small RNA-seq
15
RRBS
15
single cell RNA-seq
12
WGBS
10
snATAC-seq
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
82
Transcription
27
DNA methylation
25
DNA binding
18
DNA accessibility
8
3D chromatin structure
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
bam
114
bigWig
73
tsv
33
fastq
28
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
159
Homo sapiens
Biosample type
103
tissue
34
primary cell
23
cell line
Organ
25
heart
19
lung
18
blood
18
bodily fluid
18
brain
18
connective tissue
15
liver
14
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
7
pancreas
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
141
AMP
19
LungMap
Genome assembly (visualization)
120
hg19
108
GRCh38
Lab
141
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
160 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 28 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 23 more…
cell line
GM12878
18
HepG2
5
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