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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
ChIP-seq
RRBS
14
ATAC-seq
12
WGBS
8
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
Assay category
68
Transcription
16
DNA accessibility
15
DNA binding
12
DNA methylation
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
102
bigWig
100
bam
68
tsv
20
fastq
19
bed narrowPeak
14
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
119
Homo sapiens
Biosample type
94
tissue
25
primary cell
Organ
32
brain
23
heart
18
connective tissue
13
adipose tissue
11
blood vessel
11
vasculature
10
pancreas
9
liver
9
musculature of body
8
epithelium
7
kidney
5
limb
3
artery
1
pericardium
1
spleen
Project
119
AMP
Genome assembly (visualization)
96
GRCh38
92
hg19
Lab
118
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
RRBS
BIOSAMPLE
ASSAY
119 results
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Clear Filters
total RNA-seq
small RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
body of pancreas
2
2
4
heart left ventricle
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 25 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 17 more…
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