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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
ChIP-seq
15
RRBS
14
ATAC-seq
WGBS
8
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
Assay category
68
Transcription
16
DNA accessibility
15
DNA binding
15
DNA methylation
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
94
bigWig
91
bam
68
tsv
20
fastq
19
bed narrowPeak
15
bed bedMethyl
15
bigBed bedMethyl
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
122
Homo sapiens
Biosample type
88
tissue
34
primary cell
Organ
34
brain
19
connective tissue
17
heart
14
epithelium
13
adipose tissue
12
pancreas
11
kidney
10
vasculature
9
blood vessel
9
liver
9
musculature of body
4
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
122
AMP
Genome assembly (visualization)
107
hg19
88
GRCh38
Lab
121
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
WGBS
BIOSAMPLE
ASSAY
122 results
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total RNA-seq
small RNA-seq
ChIP-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
body of pancreas
2
2
4
omental fat pad
4
1
1
heart left ventricle
2
1
2
subcutaneous adipose tissue
4
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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