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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
15
ChIP-seq
14
ATAC-seq
12
WGBS
11
RRBS
8
Hi-C
6
single cell RNA-seq
1
FAIRE-seq
Assay category
62
Transcription
23
DNA methylation
15
DNA accessibility
15
DNA binding
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
95
bigWig
93
bam
62
tsv
20
fastq
19
bed bedMethyl
19
bigBed bedMethyl
18
bed narrowPeak
14
tagAlign
7
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
123
Homo sapiens
Biosample type
96
tissue
27
primary cell
Organ
34
brain
25
heart
19
connective tissue
14
epithelium
13
adipose tissue
12
pancreas
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
123
AMP
Genome assembly (visualization)
96
hg19
90
GRCh38
Lab
122
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
kidney
BIOSAMPLE
ASSAY
123 results
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Clear Filters
total RNA-seq
small RNA-seq
ChIP-seq
ATAC-seq
WGBS
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
2
4
1
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 25 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 19 more…
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