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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
4
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
16
Transcription
4
3D chromatin structure
4
DNA accessibility
4
DNA methylation
Target of assay
3
control
Date released
133
October, 2019
91
November, 2017
78
May, 2019
66
February, 2021
36
February, 2023
34
June, 2019
28
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
6
March, 2020
2
November, 2018
0
June, 2018
Available data
25
bigWig
22
bam
16
tsv
4
bed bed3+
4
hdf5
3
bed bedMethyl
3
bed narrowPeak
3
bigBed bedMethyl
1
bigBed narrowPeak
Organism
28
Homo sapiens
Biosample type
18
tissue
10
primary cell
Organ
25
heart
18
brain
18
connective tissue
14
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
7
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
28
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
28
AMP-T2D consortium
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
frontal cortex
1
1
1
thoracic aorta
2
1
aorta
2
diencephalon
1
1
temporal lobe
1
1
+ See 6 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 4 more…
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