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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
44
total RNA-seq
18
small RNA-seq
8
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
97
DNA binding
65
Transcription
8
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
202
bam
182
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
182
Homo sapiens
Biosample type
156
tissue
26
primary cell
Organ
49
blood vessel
49
vasculature
41
brain
36
heart
17
connective tissue
12
adipose tissue
11
epithelium
11
kidney
11
musculature of body
8
liver
7
limb
6
artery
5
pancreas
1
pericardium
Project
182
AMP
Genome assembly (visualization)
175
GRCh38
173
hg19
Lab
182
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
temporal lobe
13
1
1
thoracic aorta
12
2
1
ascending aorta
13
1
angular gyrus
12
aorta
11
1
+ See 23 more…
primary cell
kidney epithelial cell
4
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 14 more…
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