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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
70
total RNA-seq
53
WGBS
37
single cell RNA-seq
34
ChIP-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
9
Hi-C
2
FAIRE-seq
Assay category
125
Transcription
107
DNA accessibility
68
DNA methylation
34
DNA binding
9
3D chromatin structure
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
140
bam
135
bigWig
134
zippedFastqFolder
75
bed narrowPeak
65
tsv
59
fastq
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
Organism
343
Homo sapiens
Biosample type
165
primary cell
150
tissue
28
cell line
Organ
110
pancreas
93
epithelium
51
liver
27
blood
27
bodily fluid
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
209
AMP
134
HPAP
Genome assembly (visualization)
160
hg19
109
GRCh38
Lab
145
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 24 more…
tissue
liver
20
22
1
islet of Langerhans
18
6
1
heart left ventricle
2
2
4
1
spleen
7
omental fat pad
4
1
+ See 27 more…
cell line
GM12878
27
HepG2
1
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