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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
32
ATAC-seq
16
small RNA-seq
13
ChIP-seq
12
WGBS
6
Hi-C
6
RRBS
2
FAIRE-seq
Assay category
67
Transcription
34
DNA accessibility
18
DNA methylation
13
DNA binding
6
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
bam
94
bigWig
67
tsv
44
bed narrowPeak
14
bed bedMethyl
14
bigBed bedMethyl
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
138
Homo sapiens
Biosample type
117
tissue
primary cell
16
cell line
5
in vitro differentiated cells
Organ
61
pancreas
20
heart
16
epithelium
11
adipose tissue
11
brain
11
connective tissue
8
liver
7
blood vessel
7
musculature of body
7
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
138
AMP
Genome assembly (visualization)
119
hg19
118
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
ATAC-seq
small RNA-seq
ChIP-seq
WGBS
Hi-C
RRBS
FAIRE-seq
tissue
islet of Langerhans
19
19
1
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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