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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
total RNA-seq
135
ATAC-seq
18
small RNA-seq
15
RRBS
13
ChIP-seq
12
WGBS
10
Hi-C
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
FAIRE-seq
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
157
Transcription
Date released
545
February, 2021
190
May, 2020
182
May, 2021
120
July, 2018
93
February, 2023
89
August, 2017
74
August, 2021
44
July, 2019
30
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
15
February, 2018
15
March, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
76
fastq
68
tsv
64
bam
64
bigWig
4
txt
Organism
157
Homo sapiens
Biosample type
89
primary cell
63
tissue
4
in vitro differentiated cells
1
cell line
Organ
64
pancreas
45
epithelium
17
connective tissue
10
heart
9
adipose tissue
5
blood vessel
5
kidney
5
vasculature
4
bone element
4
brain
4
eye
4
liver
4
skeleton
2
artery
2
musculature of body
1
pericardium
Project
76
AMP
76
HPAP
5
T1D
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
76
AMP-T2D consortium
76
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
157 results
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Clear Filters
total RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
+ See 11 more…
tissue
islet of Langerhans
24
omental fat pad
4
subcutaneous adipose tissue
4
body of pancreas
2
heart
2
+ See 20 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
EndoC_BH1
1
See all biosamples
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