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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
18
small RNA-seq
12
ATAC-seq
3
single cell RNA-seq
Assay category
89
Transcription
12
DNA accessibility
Target of assay
3
control
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
141
bam
119
bigWig
109
bed narrowPeak
101
tsv
76
fastq
23
bed bedMethyl
23
bigBed bedMethyl
10
bed bed3
8
bed bed3+
7
txt
4
hdf5
3
bed bedgraph
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
101
Homo sapiens
Biosample type
70
tissue
30
primary cell
1
cell line
Organ
24
pancreas
16
connective tissue
12
adipose tissue
11
brain
11
heart
8
epithelium
7
liver
6
kidney
5
blood vessel
5
vasculature
4
eye
4
musculature of body
2
artery
1
pericardium
Project
101
AMP
Genome assembly (visualization)
85
GRCh38
85
hg19
Lab
101
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
tissue
islet of Langerhans
19
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
right lobe of liver
2
2
+ See 17 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cerebellar granule cell
2
+ See 14 more…
cell line
EndoC_BH1
1
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