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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
RRBS
6
total RNA-seq
3
Hi-C
1
ATAC-seq
Assay category
13
DNA binding
6
DNA methylation
6
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
20
bam
19
bigWig
12
bed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
2
bed bed3+
2
hdf5
1
bedpe bed3+
1
hic
Organism
29
Homo sapiens
Biosample type
16
cell line
13
primary cell
Organ
61
pancreas
29
epithelium
25
heart
19
connective tissue
18
brain
13
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
29
AMP
Genome assembly (visualization)
27
hg19
18
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
cell line
EndoC_BH1
13
1
1
1
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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