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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
22
Transcription
9
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
27
bigWig
24
bam
22
tsv
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3+
4
hdf5
2
bed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
37
Homo sapiens
Biosample type
81
tissue
37
primary cell
6
cell line
Organ
14
connective tissue
13
epithelium
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
37
AMP
Genome assembly (visualization)
37
hg19
24
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
37 results
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total RNA-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
ATAC-seq
DNase-seq
primary cell
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
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