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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
27
DNA methylation
10
DNA accessibility
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
90
bigWig
88
bam
tsv
23
bed bedMethyl
23
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
34
tissue
15
primary cell
6
cell line
Organ
14
epithelium
14
heart
12
pancreas
7
brain
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
4
connective tissue
3
liver
1
artery
1
eye
1
pericardium
Project
55
AMP
Genome assembly (visualization)
28
hg19
16
GRCh38
Lab
45
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
55 results
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Clear Filters
RRBS
WGBS
MeRIP-seq
Hi-C
ATAC-seq
FAIRE-seq
DNase-seq
tissue
heart left ventricle
1
4
2
islet of Langerhans
1
4
gastrocnemius medialis
4
aorta
2
heart right ventricle
2
+ See 13 more…
primary cell
osteoblast
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
+ See 9 more…
cell line
EndoC_BH1
6
See all biosamples
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