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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
53
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
15
RRBS
10
MeRIP-seq
8
Hi-C
2
FAIRE-seq
1
DNase-seq
Assay category
109
DNA accessibility
68
DNA methylation
60
Transcription
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
134
zippedFastqFolder
112
bam
110
bigWig
tsv
47
bed narrowPeak
24
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
6
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
255
Homo sapiens
Biosample type
149
primary cell
100
tissue
6
cell line
Organ
116
pancreas
94
epithelium
43
liver
14
heart
8
musculature of body
7
brain
7
vasculature
6
blood vessel
5
kidney
5
limb
4
connective tissue
1
artery
1
eye
1
pericardium
Project
134
HPAP
121
AMP
Genome assembly (visualization)
67
hg19
16
GRCh38
Lab
134
Klaus Kaestner, Upenn
47
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
255 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
MeRIP-seq
Hi-C
FAIRE-seq
DNase-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
1
+ See 13 more…
tissue
liver
20
20
islet of Langerhans
18
6
1
4
heart left ventricle
2
4
1
gastrocnemius medialis
4
aorta
2
+ See 15 more…
cell line
EndoC_BH1
6
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