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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
12
single cell RNA-seq
10
MeRIP-seq
10
snATAC-seq
8
Hi-C
7
ATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
78
Transcription
27
DNA methylation
20
DNA accessibility
8
3D chromatin structure
Target of assay
8
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
90
bigWig
88
bam
69
tsv
23
bed bedMethyl
23
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
100
tissue
37
primary cell
6
cell line
Organ
25
heart
24
connective tissue
19
epithelium
19
lung
18
brain
16
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
124
AMP
19
LungMap
Genome assembly (visualization)
97
hg19
85
GRCh38
Lab
114
AMP-T2D consortium
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
single cell RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
DNase-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
islet of Langerhans
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
cell line
EndoC_BH1
6
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