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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
121
Transcription
12
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
bigWig
82
bam
65
tsv
41
fastq
19
zippedFastqFolder
8
bed bedMethyl
8
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
152
Homo sapiens
Biosample type
81
primary cell
71
tissue
Organ
26
epithelium
23
heart
23
pancreas
17
connective tissue
16
brain
12
adipose tissue
11
blood vessel
11
vasculature
9
liver
9
musculature of body
7
kidney
5
limb
3
artery
1
pericardium
Project
93
AMP
59
HPAP
Genome assembly (visualization)
82
GRCh38
76
hg19
Lab
93
AMP-T2D consortium
59
Klaus Kaestner, Upenn
assay_title!
RRBS
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic beta cell
1
1
+ See 17 more…
tissue
heart left ventricle
2
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
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