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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
65
total RNA-seq
51
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
6
Hi-C
2
FAIRE-seq
Assay category
120
Transcription
105
DNA accessibility
66
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
97
bam
95
bigWig
60
tsv
43
bed narrowPeak
24
fastq
22
bed bedMethyl
22
bigBed bedMethyl
7
txt
3
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
297
Homo sapiens
Biosample type
161
primary cell
136
tissue
Organ
110
pancreas
93
epithelium
50
liver
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
163
AMP
134
HPAP
Genome assembly (visualization)
121
hg19
71
GRCh38
Lab
134
Klaus Kaestner, Upenn
99
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
297 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 20 more…
tissue
liver
20
22
1
islet of Langerhans
18
6
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
1
2
+ See 22 more…
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