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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
14
RRBS
11
WGBS
6
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
25
DNA methylation
8
DNA accessibility
3
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
314
August, 2021
296
May, 2020
286
August, 2017
245
May, 2021
241
October, 2019
209
February, 2021
168
June, 2019
166
July, 2018
113
May, 2019
94
December, 2017
92
February, 2023
87
November, 2018
85
July, 2019
80
April, 2019
73
September, 2018
66
May, 2022
60
November, 2019
55
March, 2020
53
October, 2018
47
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
January, 2018
5
March, 2019
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
67
bigWig
65
bam
49
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
62
tissue
23
primary cell
Organ
25
heart
18
brain
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
limb
3
artery
2
pericardium
1
eye
Project
85
AMP
Genome assembly (visualization)
73
hg19
62
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
limb
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
heart
2
1
1
frontal cortex
1
1
1
+ See 22 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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