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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
17
ATAC-seq
15
small RNA-seq
14
RRBS
12
WGBS
7
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
Assay category
52
Transcription
26
DNA methylation
19
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
68
bigWig
66
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
104
Homo sapiens
Biosample type
81
tissue
23
primary cell
Organ
25
heart
25
kidney
connective tissue
18
brain
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
104
AMP
Genome assembly (visualization)
74
GRCh38
73
hg19
Lab
90
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
month_released!
November, 2017
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
kidney
11
1
3
1
heart left ventricle
2
2
1
4
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 24 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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