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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
31
total RNA-seq
15
small RNA-seq
14
RRBS
12
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
49
Transcription
26
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
186
bam
165
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
3
bed bed3+
3
hdf5
Organism
210
Homo sapiens
Biosample type
182
tissue
28
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
connective tissue
18
epithelium
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
8
pancreas
2
pericardium
1
eye
Project
210
AMP
Genome assembly (visualization)
170
hg19
159
GRCh38
Lab
210
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 26 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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