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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
12
WGBS
11
RRBS
8
Hi-C
6
ATAC-seq
single cell RNA-seq
1
FAIRE-seq
Assay category
56
Transcription
23
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Date released
694
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
204
February, 2023
166
May, 2022
137
June, 2019
120
July, 2018
115
May, 2019
94
December, 2017
94
July, 2019
91
August, 2021
87
November, 2018
76
October, 2018
72
September, 2018
62
March, 2020
61
November, 2019
57
April, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
6
April, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
May, 2023
Available data
75
bigWig
72
bam
56
tsv
19
bed bedMethyl
19
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
94
Homo sapiens
Biosample type
73
tissue
21
primary cell
Organ
25
heart
18
connective tissue
15
brain
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
94
AMP
Genome assembly (visualization)
77
hg19
70
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 14 more…
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