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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
small RNA-seq
4
total RNA-seq
3
Hi-C
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
11
Transcription
3
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
3
control
Date released
128
October, 2019
66
November, 2017
62
June, 2019
31
May, 2019
17
July, 2019
7
October, 2017
2
November, 2018
Available data
17
bigWig
14
bam
11
tsv
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
Organism
17
Homo sapiens
Biosample type
11
tissue
6
primary cell
Organ
21
heart
17
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
8
liver
7
epithelium
7
kidney
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
17
AMP
Genome assembly (visualization)
15
hg19
13
GRCh38
Lab
17
AMP-T2D consortium
BIOSAMPLE
ASSAY
17 results
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small RNA-seq
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
WGBS
tissue
frontal cortex
1
1
1
diencephalon
1
1
temporal lobe
1
1
cerebellum
1
cerebellum (Hemisphere)
1
+ See 2 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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