Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
26
Transcription
7
3D chromatin structure
3
DNA methylation
2
DNA accessibility
Target of assay
3
control
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
26
tsv
17
bigWig
14
bam
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
Organism
38
Homo sapiens
Biosample type
31
tissue
7
primary cell
Organ
30
brain
28
heart
20
connective tissue
15
vasculature
14
adipose tissue
14
blood vessel
13
epithelium
12
musculature of body
11
kidney
11
liver
8
limb
7
pancreas
5
artery
2
eye
2
pericardium
1
nerve
1
spinal cord
Project
38
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
WGBS
tissue
gastrocnemius medialis
1
4
frontal cortex
2
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 15 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
See all biosamples
Download