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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
single cell RNA-seq
72
total RNA-seq
64
ATAC-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
3
RNA microarray
2
Capture-C
1
whole genome sequencing assay
Assay category
182
Transcription
70
DNA accessibility
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
126
tsv
81
bed narrowPeak
64
xls
57
txt
33
bigWig
20
bam
4
tagAlign
3
bed bed3+
3
fastq
2
bedpe bed3+
2
hic
1
vcf
Organism
287
Homo sapiens
Biosample type
232
tissue
44
cell line
in vitro differentiated cells
12
primary cell
Organ
133
kidney
92
heart
40
liver
13
epithelium
8
embryo
6
blood vessel
6
vasculature
5
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
288
AMP
Genome assembly (visualization)
83
GRCh38
35
hg19
Lab
128
Katalin Susztak, Upenn
124
AMP-T2D consortium
36
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
2
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
288 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
Capture-C
whole genome sequencing assay
tissue
kidney
9
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
5
4
pancreatic cell
1
pancreatic ductal cell
1
unclassified exocrine cell
1
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