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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
98
total RNA-seq
29
ATAC-seq
17
pCHi-C
3
single cell RNA-seq
1
DNAme array
Assay category
122
DNA binding
101
Transcription
29
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
217
bigWig
195
bam
128
bed narrowPeak
97
tsv
84
tagAlign
3
fastq
2
bed bed3+
Organism
270
Homo sapiens
Biosample type
209
primary cell
in vitro differentiated cells
40
tissue
21
cell line
Organ
59
pancreas
22
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
153
T1D
117
AMP
Genome assembly (visualization)
230
hg19
195
GRCh38
Lab
188
Kyle Gaulton, UCSD
82
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
270 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 14 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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