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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
total RNA-seq
107
ATAC-seq
50
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
1
DNase-seq
1
pCHi-C
Assay category
262
Transcription
110
DNA accessibility
50
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
31
control
27
histone
27
histone modification
27
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
374
bam
353
bigWig
261
tsv
50
tagAlign
36
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
3
fastq
1
bed broadPeak
1
bigBed broadPeak
Organism
468
Homo sapiens
Biosample type
274
tissue
187
primary cell
7
cell line
Organ
204
liver
25
heart
24
connective tissue
20
epithelium
18
brain
17
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
423
AMP
45
T1D
Genome assembly (visualization)
360
hg19
295
GRCh38
Lab
413
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
468 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
MeRIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
DNase-seq
pCHi-C
tissue
liver
145
50
1
heart left ventricle
2
2
1
4
islet of Langerhans
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 26 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 53 more…
cell line
EndoC_BH1
6
HepG2
1
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