Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
328
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
328
DNA binding
7
Transcription
2
DNA accessibility
Target of assay
244
transcription factor
66
recombinant protein
65
control
37
RNA binding protein
21
histone
21
histone modification
15
chromatin remodeller
12
narrow histone mark
9
broad histone mark
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
401
bam
342
bigWig
327
fastq
315
bed narrowPeak
313
bigBed narrowPeak
tagAlign
71
bed broadPeak
65
bigBed broadPeak
7
tsv
3
tar
1
bed bed3+
Organism
347
Homo sapiens
Biosample type
309
cell line
20
tissue
18
primary cell
Organ
303
liver
25
brain
13
epithelium
11
pancreas
6
connective tissue
6
vasculature
3
blood vessel
Project
347
AMP
Genome assembly (visualization)
272
hg19
235
GRCh38
Lab
337
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
347 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
303
EndoC_BH1
6
tissue
layer of hippocampus
8
middle frontal area 46
6
islet of Langerhans
4
cerebellum (Hemisphere)
2
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
+ See 2 more…
See all biosamples
Download