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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
4
MeRIP-seq
4
total RNA-seq
2
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
400
DNA binding
6
Transcription
2
DNA accessibility
Target of assay
242
transcription factor
86
histone
86
histone modification
71
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
nucleotide modification
2
other context
2
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
394
bam
335
bigWig
320
fastq
311
bed narrowPeak
309
bigBed narrowPeak
78
tagAlign
67
bed broadPeak
61
bigBed broadPeak
6
tsv
3
tar
1
bed bed3+
Organism
412
Homo sapiens
Biosample type
315
cell line
86
tissue
11
primary cell
Organ
315
liver
91
brain
epithelium
11
pancreas
6
connective tissue
6
vasculature
3
blood vessel
Project
412
AMP
Genome assembly (visualization)
284
GRCh38
283
hg19
Lab
408
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
412 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
3
pancreatic cell
1
unclassified exocrine cell
1
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