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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
52
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
52
DNA binding
Target of assay
23
histone
23
histone modification
16
control
14
narrow histone mark
13
transcription factor
9
broad histone mark
3
RNA binding protein
Date released
406
November, 2017
296
August, 2017
230
October, 2019
161
May, 2021
117
May, 2019
90
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
25
January, 2019
24
February, 2018
15
October, 2017
9
June, 2019
8
February, 2021
6
September, 2017
2
March, 2020
Available data
35
bed narrowPeak
35
bigWig
33
bam
24
tagAlign
5
bigBed narrowPeak
3
bed bed3+
Organism
52
Homo sapiens
Biosample type
21
in vitro differentiated cells
18
cell line
13
primary cell
Organ
22
liver
7
epithelium
3
eye
2
musculature of body
1
connective tissue
1
heart
Project
52
AMP
Genome assembly (visualization)
34
hg19
21
GRCh38
Lab
34
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
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inconsistent ontology term
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
primary cell
hepatocyte
4
cardiac muscle cell
3
retinal pigment epithelial cell
3
skeletal muscle cell
2
cardiac fibroblast
1
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