Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
16
ATAC-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
2
DNase-seq
1
FAIRE-seq
Assay category
74
DNA binding
19
DNA accessibility
14
Transcription
4
3D chromatin structure
Target of assay
47
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
54
bam
9
tagAlign
6
bigWig
4
bigBed narrowPeak
4
hic
3
bedpe bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed narrowPeak
1
tar
Organism
115
Homo sapiens
Biosample type
81
tissue
20
primary cell
10
cell line
4
in vitro differentiated cells
Organ
22
eye
17
limb
14
blood vessel
14
epithelium
14
vasculature
11
nerve
10
pancreas
9
kidney
9
vein
8
brain
7
connective tissue
5
artery
4
gonad
4
ovary
3
heart
2
musculature of body
1
adipose tissue
1
lymph node
1
pituitary gland
1
skin of body
Project
115
AMP
Genome assembly (visualization)
GRCh38
404
hg19
Lab
115
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
115 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
21
13
14
4
tibial nerve
11
tibial artery
5
kidney
2
adipose tissue
1
+ See 10 more…
primary cell
endothelial cell of umbilical vein
7
1
1
cardiac fibroblast
2
epithelial cell of proximal tubule
2
cardiac muscle cell
1
kidney glomerular epithelial cell
1
+ See 5 more…
cell line
Panc1
7
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
See all biosamples
Download