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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
167
DNase-seq
22
total RNA-seq
16
ATAC-seq
4
pCHi-C
1
Hi-C
Assay category
195
DNA binding
183
DNA accessibility
22
Transcription
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
349
bam
323
bigWig
314
bed narrowPeak
210
bigBed narrowPeak
167
bed bed3+
167
bed broadPeak
167
bigBed broadPeak
49
tagAlign
8
tsv
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
405
Homo sapiens
Biosample type
405
tissue
89
primary cell
30
cell line
8
in vitro differentiated cells
Organ
111
brain
101
limb
72
kidney
42
nerve
35
heart
32
musculature of body
29
blood vessel
29
vasculature
28
artery
24
eye
18
ureter
7
pancreas
6
liver
4
gonad
4
ovary
3
connective tissue
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
405
AMP
Genome assembly (visualization)
324
GRCh38
310
hg19
Lab
405
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
405 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
2
4
1
heart
5
18
2
1
tibial artery
23
2
1
brain
5
12
1
kidney
4
13
muscle of arm
17
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
liver
5
1
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
superior frontal gyrus
4
central medial thalamic nucleus
3
cerebellum (Hemisphere)
2
1
heart left ventricle
3
middle frontal gyrus
2
1
middle temporal gyrus
3
putamen
2
1
retina
3
right renal cortex interstitium
3
angular gyrus
2
anterior cingulate gyrus
2
body of pancreas
2
coronary artery
2
frontal cortex
2
gyrus rectus
2
medial globus pallidus
2
occipital pole
2
pancreas
2
pons
1
1
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
right atrium auricular region
2
secondary auditory cortex
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
Ammon's horn
1
adipose tissue
1
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
ascending aorta
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
caudate nucleus
1
cerebellar cortex
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
forelimb muscle
1
frontal pole
1
globus pallidus
1
head of caudate nucleus
1
heart right ventricle
1
hindlimb muscle
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior parietal cortex
1
inferior temporal gyrus
1
insular gyrus
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
left cardiac atrium
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
medulla oblongata
1
midbrain
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
occipital lobe
1
olivary body
1
omental fat pad
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
superior temporal gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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