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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
31
DNA binding
27
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
295
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
135
Homo sapiens
Biosample type
77
tissue
58
primary cell
Organ
30
heart
29
connective tissue
20
musculature of body
17
epithelium
15
brain
14
kidney
12
adipose tissue
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
limb
4
eye
3
artery
2
pericardium
Project
135
AMP
Genome assembly (visualization)
110
hg19
102
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
February, 2023
BIOSAMPLE
ASSAY
135 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
skeletal muscle satellite cell
1
8
1
mesenchymal stem cell
7
cardiac fibroblast
5
1
epithelial cell of proximal tubule
1
3
1
cardiac muscle cell
3
1
+ See 17 more…
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