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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
5
total RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RNA microarray
1
MPRA
Assay category
31
DNA binding
8
Transcription
3
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
223
bam
215
bigWig
210
bed narrowPeak
210
bigBed narrowPeak
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
9
tsv
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
44
Homo sapiens
Biosample type
39
primary cell
3
tissue
2
in vitro differentiated cells
1
cell line
Organ
15
epithelium
12
connective tissue
10
musculature of body
6
kidney
5
heart
5
liver
3
eye
3
pancreas
Project
42
AMP
3
HPAP
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
42
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
24
inconsistent ontology term
7
audit script error
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
RNA microarray
MPRA
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
hepatocyte
5
cardiac muscle cell
3
+ See 6 more…
tissue
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
MIN6
1
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